0001 function [x,y] = testfitequil_yp(equil_in,equil_fit,rho,theta,ns)
0002
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0021 close all
0022
0023 flagcalc = 0;
0024
0025 if nargin < 3,
0026 rho = 0.25;
0027 theta = 0.2;
0028 ns = 2;
0029 flagcalc = 1;
0030 end
0031 if nargin < 4,
0032 theta = 0.2;
0033 ns = 2;
0034 end
0035 if nargin < 5,
0036 ns = 2;
0037 end
0038
0039 x = [];
0040 y = [];
0041
0042 prec = 1e-3;
0043
0044 sigmaIp = sign(equil_in.psi_apRp(end));
0045
0046 psin = equil_in.psi_apRp/equil_in.psi_apRp(end);
0047 [prho] = psi2rho_jd(equil_in,psin,'spline');
0048 dpsin = gradient(psin(:));
0049 d2psin = gradient(dpsin(:));
0050 dprho = gradient(prho(:));
0051 dtheta = gradient(equil_in.theta);
0052
0053 pTe = equil_in.pTe(:);
0054 pne = equil_in.pne(:);
0055 pzTi = equil_in.pzTi';
0056 pzni = equil_in.pzni';
0057
0058 Bx = equil_in.ptBx + eps;
0059 By = equil_in.ptBy + eps;
0060 Bz = equil_in.ptBPHI;
0061
0062 Rp = equil_in.Rp;
0063 Zp = equil_in.Zp;
0064 x = equil_in.ptx;
0065 y = equil_in.pty;
0066
0067 BP = sqrt(Bx.^2 + By.^2);
0068 B = sqrt(Bx.^2 + By.^2 + Bz.^2);
0069 r = sqrt(x.^2 + y.^2)+eps;
0070 calpha = (x.*By - y.*Bx)./BP./r;
0071 calpha(1,:) = calpha(2,:);
0072 salpha = sigmaIp*(x.*Bx + y.*By)./BP./r;
0073 salpha(1,:) = salpha(2,:);
0074
0075
0076
0077 [drdtheta,drdrho] = gradient(r);
0078 drdtheta = drdtheta./(ones(length(dprho),1)*dtheta);
0079 drdrho = drdrho./(dprho(:)*ones(1,length(dtheta)));
0080 [d2rdtheta2,d2rdthetadrho] = gradient(drdtheta);
0081 [d2rdrhodtheta,d2rdrho2] = gradient(drdrho);
0082 d2rdtheta2 = d2rdtheta2./(ones(length(dprho),1)*dtheta);
0083 d2rdthetadrho = d2rdthetadrho./(dprho(:)*ones(1,length(dtheta)));
0084 d2rdrhodtheta = d2rdrhodtheta./(ones(length(dprho),1)*dtheta);
0085 d2rdrho2 = d2rdrho2./(dprho(:)*ones(1,length(dtheta)));
0086
0087 [dxdtheta,dxdrho] = gradient(x);
0088 dxdtheta = dxdtheta./(ones(length(dprho),1)*dtheta);
0089 dxdrho = dxdrho./(dprho(:)*ones(1,length(dtheta)));
0090 [d2xdtheta2,d2xdthetadrho] = gradient(dxdtheta);
0091 [d2xdrhodtheta,d2xdrho2] = gradient(dxdrho);
0092 d2xdtheta2 = d2xdtheta2./(ones(length(dprho),1)*dtheta);
0093 d2xdthetadrho = d2xdthetadrho./(dprho(:)*ones(1,length(dtheta)));
0094 d2xdrhodtheta = d2xdrhodtheta./(ones(length(dprho),1)*dtheta);
0095 d2xdrho2 = d2xdrho2./(dprho(:)*ones(1,length(dtheta)));
0096
0097 [dydtheta,dydrho] = gradient(y);
0098 dydtheta = dydtheta./(ones(length(dprho),1)*dtheta);
0099 dydrho = dydrho./(dprho(:)*ones(1,length(dtheta)));
0100 [d2ydtheta2,d2ydthetadrho] = gradient(dydtheta);
0101 [d2ydrhodtheta,d2ydrho2] = gradient(dydrho);
0102 d2ydtheta2 = d2ydtheta2./(ones(length(dprho),1)*dtheta);
0103 d2ydthetadrho = d2ydthetadrho./(dprho(:)*ones(1,length(dtheta)));
0104 d2xdrhodtheta = d2ydrhodtheta./(ones(length(dprho),1)*dtheta);
0105 d2ydrho2 = d2ydrho2./(dprho(:)*ones(1,length(dtheta)));
0106
0107 [dcalphadtheta,dcalphadrho] = gradient(calpha);
0108 dcalphadtheta = dcalphadtheta./(ones(length(dprho),1)*dtheta);
0109 dcalphadrho = dcalphadrho./(dprho(:)*ones(1,length(dtheta)));
0110 [d2calphadtheta2,d2calphadthetadrho] = gradient(dcalphadtheta);
0111 [d2calphadrhodtheta,d2calphadrho2] = gradient(dcalphadrho);
0112 d2calphadtheta2 = d2calphadtheta2./(ones(length(dprho),1)*dtheta);
0113 d2calphadthetadrho = d2calphadthetadrho./(dprho(:)*ones(1,length(dtheta)));
0114 d2calphadrhodtheta = d2calphadrhodtheta./(ones(length(dprho),1)*dtheta);
0115 d2calphadrho2 = d2calphadrho2./(dprho(:)*ones(1,length(dtheta)));
0116
0117 [dsalphadtheta,dsalphadrho] = gradient(salpha);
0118 dsalphadtheta = dsalphadtheta./(ones(length(dprho),1)*dtheta);
0119 dsalphadrho = dsalphadrho./(dprho(:)*ones(1,length(dtheta)));
0120 [d2salphadtheta2,d2salphadthetadrho] = gradient(dsalphadtheta);
0121 [d2salphadrhodtheta,d2salphadrho2] = gradient(dsalphadrho);
0122 d2salphadtheta2 = d2salphadtheta2./(ones(length(dprho),1)*dtheta);
0123 d2salphadthetadrho = d2salphadthetadrho./(dprho(:)*ones(1,length(dtheta)));
0124 d2salphadrhodtheta = d2salphadrhodtheta./(ones(length(dprho),1)*dtheta);
0125 d2salphadrho2 = d2salphadrho2./(dprho(:)*ones(1,length(dtheta)));
0126
0127 [dBzdtheta,dBzdrho] = gradient(Bz);
0128 dBzdtheta = dBzdtheta./(ones(length(dprho),1)*dtheta);
0129 dBzdrho = dBzdrho./(dprho(:)*ones(1,length(dtheta)));
0130 [d2Bzdtheta2,d2Bzdthetadrho] = gradient(dBzdtheta);
0131 [d2Bzdrhodtheta,d2Bzdrho2] = gradient(dBzdrho);
0132 d2Bzdtheta2 = d2Bzdtheta2./(ones(length(dprho),1)*dtheta);
0133 d2Bzdthetadrho = d2Bzdthetadrho./(dprho(:)*ones(1,length(dtheta)));
0134 d2Bzdrhodtheta = d2Bzdrhodtheta./(ones(length(dprho),1)*dtheta);
0135 d2Bzdrho2 = d2Bzdrho2./(dprho(:)*ones(1,length(dtheta)));
0136
0137 [dBPdtheta,dBPdrho] = gradient(BP);
0138 dBPdtheta = dBPdtheta./(ones(length(dprho),1)*dtheta);
0139 dBPdrho = dBPdrho./(dprho(:)*ones(1,length(dtheta)));
0140 [d2BPdtheta2,d2BPdthetadrho] = gradient(dBPdtheta);
0141 [d2BPdrhodtheta,d2BPdrho2] = gradient(dBPdrho);
0142 d2BPdtheta2 = d2BPdtheta2./(ones(length(dprho),1)*dtheta);
0143 d2BPdthetadrho = d2BPdthetadrho./(dprho(:)*ones(1,length(dtheta)));
0144 d2BPdrhodtheta = d2BPdrhodtheta./(ones(length(dprho),1)*dtheta);
0145 d2BPdrho2 = d2BPdrho2./(dprho(:)*ones(1,length(dtheta)));
0146
0147 [dBdtheta,dBdrho] = gradient(B);
0148 dBdtheta = dBdtheta./(ones(length(dprho),1)*dtheta);
0149 dBdrho = dBdrho./(dprho(:)*ones(1,length(dtheta)));
0150 [d2Bdtheta2,d2Bdthetadrho] = gradient(dBdtheta);
0151 [d2Bdrhodtheta,d2Bdrho2] = gradient(dBdrho);
0152 d2Bdtheta2 = d2Bdtheta2./(ones(length(dprho),1)*dtheta);
0153 d2Bdthetadrho = d2Bdthetadrho./(dprho(:)*ones(1,length(dtheta)));
0154 d2Bdrhodtheta = d2Bdrhodtheta./(ones(length(dprho),1)*dtheta);
0155 d2Bdrho2 = d2Bdrho2./(dprho(:)*ones(1,length(dtheta)));
0156
0157 dpsindrho = dpsin./dprho;
0158 d2psindrho2 = d2psin./dprho./dprho;
0159
0160 if ~isempty(pTe),
0161 pdTe = gradient(pTe);
0162 pd2Te = gradient(pdTe);
0163 dTedrho = pdTe./dprho(:);
0164 d2Tedrho2 = pd2Te./dprho(:)./dprho(:);
0165 end
0166 if ~isempty(pne),
0167 pdne = gradient(pne);
0168 pd2ne = gradient(pdne);
0169 dnedrho = pdne./dprho(:);
0170 d2nedrho2 = pd2ne./dprho(:)./dprho(:);
0171 end
0172 if ~isempty(equil_in.zZi),
0173 for i = 1:length(equil_in.zZi)
0174 pdzTi = gradient(pzTi(:,i));
0175 pd2zTi = gradient(pdzTi);
0176 pdzni = gradient(pzni(:,i));
0177 pd2zni = gradient(pdzni);
0178
0179 zdTidrho(:,i) = pdzTi./dprho(:);
0180 zdnidrho(:,i) = pdzni./dprho(:);
0181
0182 zd2Tidrho2(:,i) = pd2zTi./dprho(:)./dprho(:);
0183 zd2nidrho2(:,i) = pd2zni./dprho(:)./dprho(:);
0184 end
0185 end
0186
0187 dxstardpsin = gradient(x(:,1))./dpsin(:);
0188
0189 if isinf(Rp),
0190 Upsilon = 1;
0191 else
0192 Upsilon = 1 + x/Rp;
0193 end
0194
0195 gradrho = Upsilon.*BP.*(dxstardpsin*ones(1,size(x,2)))/abs(equil_fit.psia_apRp);
0196
0197 [dgradrhodtheta,dgradrhodrho] = gradient(gradrho);
0198 dgradrhodtheta = dgradrhodtheta./(ones(length(dprho),1)*dtheta);
0199 dgradrhodrho = dgradrhodrho./(dprho(:)*ones(1,length(dtheta)));
0200 [d2gradrhodtheta2,d2gradrhodthetadrho] = gradient(dgradrhodtheta);
0201 [d2gradrhodrhodtheta,d2gradrhodrho2] = gradient(dgradrhodrho);
0202 d2gradrhodtheta2 = d2gradrhodtheta2./(ones(length(dprho),1)*dtheta);
0203 d2gradrhodthetadrho = d2gradrhodthetadrho./(dprho(:)*ones(1,length(dtheta)));
0204 d2gradrhodrhodtheta = d2gradrhodrhodtheta./(ones(length(dprho),1)*dtheta);
0205 d2gradrhodrho2 = d2gradrhodrho2./(dprho(:)*ones(1,length(dtheta)));
0206
0207
0208
0209 flagcalc = 0
0210 if flagcalc == 0
0211
0212 close all;
0213
0214 nrho_fit = 500;
0215 ntheta_fit= length(equil_in.theta);
0216
0217 rho_fit = linspace(prho(1),prho(end),nrho_fit)';
0218 rho_fit(1) = prec;
0219 theta_fit = equil_in.theta';
0220
0221 psin_fit = ppval(equil_fit.psin_fit.pp_f,rho_fit);psin_fit = psin_fit(:);
0222 psin_fit1 = ppval_yp(equil_fit.psin_fit.pp_f,rho_fit);psin_fit1 = psin_fit1(:);
0223 dpsindrho_fit = ppval(equil_fit.psin_fit.pp_dfdrho,rho_fit);
0224 dpsindrho_fit1 = ppval_yp(equil_fit.psin_fit.pp_dfdrho,rho_fit);
0225 d2psindrho2_fit = ppval(equil_fit.psin_fit.pp_d2fdrho2,rho_fit);
0226 d2psindrho2_fit1 = ppval_yp(equil_fit.psin_fit.pp_d2fdrho2,rho_fit);
0227
0228 if isfield(equil_fit,'Te_fit'),
0229 Te_fit = ppval(equil_fit.Te_fit.pp_f,rho_fit);Te_fit = Te_fit(:);
0230 Te_fit1 = ppval_yp(equil_fit.Te_fit.pp_f,rho_fit);Te_fit1 = Te_fit1(:);
0231 dTedrho_fit = ppval(equil_fit.Te_fit.pp_dfdrho,rho_fit);
0232 dTedrho_fit1 = ppval_yp(equil_fit.Te_fit.pp_dfdrho,rho_fit);
0233 d2Tedrho2_fit = ppval(equil_fit.Te_fit.pp_d2fdrho2,rho_fit);
0234 d2Tedrho2_fit1 = ppval_yp(equil_fit.Te_fit.pp_d2fdrho2,rho_fit);
0235 end
0236
0237 if isfield(equil_fit,'ne_fit'),
0238 ne_fit = ppval(equil_fit.ne_fit.pp_f,rho_fit);ne_fit = ne_fit(:);
0239 ne_fit1 = ppval_yp(equil_fit.ne_fit.pp_f,rho_fit);ne_fit1 = ne_fit1(:);
0240 dnedrho_fit = ppval(equil_fit.ne_fit.pp_dfdrho,rho_fit);
0241 dnedrho_fit1 = ppval_yp(equil_fit.ne_fit.pp_dfdrho,rho_fit);
0242 d2nedrho2_fit = ppval(equil_fit.ne_fit.pp_d2fdrho2,rho_fit);
0243 d2nedrho2_fit1 = ppval_yp(equil_fit.ne_fit.pp_d2fdrho2,rho_fit);
0244 end
0245
0246 if isfield(equil_fit,'zTi_fit'),
0247 zTi_fit = ppval(equil_fit.zTi_fit.pp_f,rho_fit);
0248 zTi_fit1 = ppval_yp(equil_fit.zTi_fit.pp_f,rho_fit);
0249 zdTidrho_fit = ppval(equil_fit.zTi_fit.pp_dfdrho,rho_fit);
0250 zdTidrho_fit1 = ppval_yp(equil_fit.zTi_fit.pp_dfdrho,rho_fit);
0251 zd2Tidrho2_fit = ppval(equil_fit.zTi_fit.pp_d2fdrho2,rho_fit);
0252 zd2Tidrho2_fit1 = ppval_yp(equil_fit.zTi_fit.pp_d2fdrho2,rho_fit);
0253 end
0254
0255 if isfield(equil_fit,'zni_fit'),
0256 zni_fit = ppval(equil_fit.zni_fit.pp_f,rho_fit);
0257 zni_fit1 = ppval_yp(equil_fit.zni_fit.pp_f,rho_fit);
0258 zdnidrho_fit = ppval(equil_fit.zni_fit.pp_dfdrho,rho_fit);
0259 zdnidrho_fit1 = ppval_yp(equil_fit.zni_fit.pp_dfdrho,rho_fit);
0260 zd2nidrho2_fit = ppval(equil_fit.zni_fit.pp_d2fdrho2,rho_fit);
0261 zd2nidrho2_fit1 = ppval_yp(equil_fit.zni_fit.pp_d2fdrho2,rho_fit);
0262 end
0263
0264
0265
0266 nr = 5;
0267 rho_fit1 = prho(1:nr:end);
0268 rho_fit1(1) = prec;
0269
0270 dxstardpsin_fit = ppval(equil_fit.dxstardpsin_fit.pp_f,rho_fit1);dxstardpsin_fit = dxstardpsin_fit(:);
0271 dxstardpsin_fit1 = ppval_yp(equil_fit.dxstardpsin_fit.pp_f,rho_fit1);dxstardpsin_fit1 = dxstardpsin_fit1(:);
0272 ddxstardpsindrho_fit = ppval(equil_fit.dxstardpsin_fit.pp_dfdrho,rho_fit1);ddxstardpsindrho_fit = ddxstardpsindrho_fit(:);
0273 ddxstardpsindrho_fit1 = ppval_yp(equil_fit.dxstardpsin_fit.pp_dfdrho,rho_fit1);ddxstardpsindrho_fit1 = ddxstardpsindrho_fit1(:);
0274 d2dxstardpsindrho2_fit = ppval(equil_fit.dxstardpsin_fit.pp_d2fdrho2,rho_fit1);d2dxstardpsindrho2_fit = d2dxstardpsindrho2_fit(:);
0275 d2dxstardpsindrho2_fit1 = ppval_yp(equil_fit.dxstardpsin_fit.pp_d2fdrho2,rho_fit1);d2dxstardpsindrho2_fit1 = d2dxstardpsindrho2_fit1(:);
0276
0277 x_a0_fit = ppval(equil_fit.x_fit.pp_a0,rho_fit1);
0278 x_an_fit = ppval(equil_fit.x_fit.pp_an,rho_fit1);
0279 x_bn_fit = ppval(equil_fit.x_fit.pp_bn,rho_fit1);
0280 x_da0drho_fit = ppval(equil_fit.x_fit.pp_da0drho,rho_fit1);
0281 x_dandrho_fit = ppval(equil_fit.x_fit.pp_dandrho,rho_fit1);
0282 x_dbndrho_fit = ppval(equil_fit.x_fit.pp_dbndrho,rho_fit1);
0283 x_d2a0drho2_fit = ppval(equil_fit.x_fit.pp_d2a0drho2,rho_fit1);
0284 x_d2andrho2_fit = ppval(equil_fit.x_fit.pp_d2andrho2,rho_fit1);
0285 x_d2bndrho2_fit = ppval(equil_fit.x_fit.pp_d2bndrho2,rho_fit1);
0286
0287 y_a0_fit = ppval(equil_fit.y_fit.pp_a0,rho_fit1);
0288 y_an_fit = ppval(equil_fit.y_fit.pp_an,rho_fit1);
0289 y_bn_fit = ppval(equil_fit.y_fit.pp_bn,rho_fit1);
0290 y_da0drho_fit = ppval(equil_fit.y_fit.pp_da0drho,rho_fit1);
0291 y_dandrho_fit = ppval(equil_fit.y_fit.pp_dandrho,rho_fit1);
0292 y_dbndrho_fit = ppval(equil_fit.y_fit.pp_dbndrho,rho_fit1);
0293 y_d2a0drho2_fit = ppval(equil_fit.y_fit.pp_d2a0drho2,rho_fit1);
0294 y_d2andrho2_fit = ppval(equil_fit.y_fit.pp_d2andrho2,rho_fit1);
0295 y_d2bndrho2_fit = ppval(equil_fit.y_fit.pp_d2bndrho2,rho_fit1);
0296
0297 Bx_a0_fit = ppval(equil_fit.Bx_fit.pp_a0,rho_fit1);
0298 Bx_an_fit = ppval(equil_fit.Bx_fit.pp_an,rho_fit1);
0299 Bx_bn_fit = ppval(equil_fit.Bx_fit.pp_bn,rho_fit1);
0300 Bx_da0drho_fit = ppval(equil_fit.Bx_fit.pp_da0drho,rho_fit1);
0301 Bx_dandrho_fit = ppval(equil_fit.Bx_fit.pp_dandrho,rho_fit1);
0302 Bx_dbndrho_fit = ppval(equil_fit.Bx_fit.pp_dbndrho,rho_fit1);
0303 Bx_d2a0drho2_fit = ppval(equil_fit.Bx_fit.pp_d2a0drho2,rho_fit1);
0304 Bx_d2andrho2_fit = ppval(equil_fit.Bx_fit.pp_d2andrho2,rho_fit1);
0305 Bx_d2bndrho2_fit = ppval(equil_fit.Bx_fit.pp_d2bndrho2,rho_fit1);
0306
0307 By_a0_fit = ppval(equil_fit.By_fit.pp_a0,rho_fit1);
0308 By_an_fit = ppval(equil_fit.By_fit.pp_an,rho_fit1);
0309 By_bn_fit = ppval(equil_fit.By_fit.pp_bn,rho_fit1);
0310 By_da0drho_fit = ppval(equil_fit.By_fit.pp_da0drho,rho_fit1);
0311 By_dandrho_fit = ppval(equil_fit.By_fit.pp_dandrho,rho_fit1);
0312 By_dbndrho_fit = ppval(equil_fit.By_fit.pp_dbndrho,rho_fit1);
0313 By_d2a0drho2_fit = ppval(equil_fit.By_fit.pp_d2a0drho2,rho_fit1);
0314 By_d2andrho2_fit = ppval(equil_fit.By_fit.pp_d2andrho2,rho_fit1);
0315 By_d2bndrho2_fit = ppval(equil_fit.By_fit.pp_d2bndrho2,rho_fit1);
0316
0317 Bz_a0_fit = ppval(equil_fit.Bz_fit.pp_a0,rho_fit1);
0318 Bz_an_fit = ppval(equil_fit.Bz_fit.pp_an,rho_fit1);
0319 Bz_bn_fit = ppval(equil_fit.Bz_fit.pp_bn,rho_fit1);
0320 Bz_da0drho_fit = ppval(equil_fit.Bz_fit.pp_da0drho,rho_fit1);
0321 Bz_dandrho_fit = ppval(equil_fit.Bz_fit.pp_dandrho,rho_fit1);
0322 Bz_dbndrho_fit = ppval(equil_fit.Bz_fit.pp_dbndrho,rho_fit1);
0323 Bz_d2a0drho2_fit = ppval(equil_fit.Bz_fit.pp_d2a0drho2,rho_fit1);
0324 Bz_d2andrho2_fit = ppval(equil_fit.Bz_fit.pp_d2andrho2,rho_fit1);
0325 Bz_d2bndrho2_fit = ppval(equil_fit.Bz_fit.pp_d2bndrho2,rho_fit1);
0326
0327 B_a0_fit = ppval(equil_fit.B_fit.pp_a0,rho_fit1);
0328 B_an_fit = ppval(equil_fit.B_fit.pp_an,rho_fit1);
0329 B_bn_fit = ppval(equil_fit.B_fit.pp_bn,rho_fit1);
0330 B_da0drho_fit = ppval(equil_fit.B_fit.pp_da0drho,rho_fit1);
0331 B_dandrho_fit = ppval(equil_fit.B_fit.pp_dandrho,rho_fit1);
0332 B_dbndrho_fit = ppval(equil_fit.B_fit.pp_dbndrho,rho_fit1);
0333 B_d2a0drho2_fit = ppval(equil_fit.B_fit.pp_d2a0drho2,rho_fit1);
0334 B_d2andrho2_fit = ppval(equil_fit.B_fit.pp_d2andrho2,rho_fit1);
0335 B_d2bndrho2_fit = ppval(equil_fit.B_fit.pp_d2bndrho2,rho_fit1);
0336
0337 BP_a0_fit = ppval(equil_fit.BP_fit.pp_a0,rho_fit1);
0338 BP_an_fit = ppval(equil_fit.BP_fit.pp_an,rho_fit1);
0339 BP_bn_fit = ppval(equil_fit.BP_fit.pp_bn,rho_fit1);
0340 BP_da0drho_fit = ppval(equil_fit.BP_fit.pp_da0drho,rho_fit1);
0341 BP_dandrho_fit = ppval(equil_fit.BP_fit.pp_dandrho,rho_fit1);
0342 BP_dbndrho_fit = ppval(equil_fit.BP_fit.pp_dbndrho,rho_fit1);
0343 BP_d2a0drho2_fit = ppval(equil_fit.BP_fit.pp_d2a0drho2,rho_fit1);
0344 BP_d2andrho2_fit = ppval(equil_fit.BP_fit.pp_d2andrho2,rho_fit1);
0345 BP_d2bndrho2_fit = ppval(equil_fit.BP_fit.pp_d2bndrho2,rho_fit1);
0346
0347 r_a0_fit = ppval(equil_fit.r_fit.pp_a0,rho_fit1);
0348 r_an_fit = ppval(equil_fit.r_fit.pp_an,rho_fit1);
0349 r_bn_fit = ppval(equil_fit.r_fit.pp_bn,rho_fit1);
0350 r_da0drho_fit = ppval(equil_fit.r_fit.pp_da0drho,rho_fit1);
0351 r_dandrho_fit = ppval(equil_fit.r_fit.pp_dandrho,rho_fit1);
0352 r_dbndrho_fit = ppval(equil_fit.r_fit.pp_dbndrho,rho_fit1);
0353 r_d2a0drho2_fit = ppval(equil_fit.r_fit.pp_d2a0drho2,rho_fit1);
0354 r_d2andrho2_fit = ppval(equil_fit.r_fit.pp_d2andrho2,rho_fit1);
0355 r_d2bndrho2_fit = ppval(equil_fit.r_fit.pp_d2bndrho2,rho_fit1);
0356
0357 calpha_a0_fit = ppval(equil_fit.calpha_fit.pp_a0,rho_fit1);
0358 calpha_an_fit = ppval(equil_fit.calpha_fit.pp_an,rho_fit1);
0359 calpha_bn_fit = ppval(equil_fit.calpha_fit.pp_bn,rho_fit1);
0360 calpha_da0drho_fit = ppval(equil_fit.calpha_fit.pp_da0drho,rho_fit1);
0361 calpha_dandrho_fit = ppval(equil_fit.calpha_fit.pp_dandrho,rho_fit1);
0362 calpha_dbndrho_fit = ppval(equil_fit.calpha_fit.pp_dbndrho,rho_fit1);
0363 calpha_d2a0drho2_fit = ppval(equil_fit.calpha_fit.pp_d2a0drho2,rho_fit1);
0364 calpha_d2andrho2_fit = ppval(equil_fit.calpha_fit.pp_d2andrho2,rho_fit1);
0365 calpha_d2bndrho2_fit = ppval(equil_fit.calpha_fit.pp_d2bndrho2,rho_fit1);
0366
0367 salpha_a0_fit = ppval(equil_fit.salpha_fit.pp_a0,rho_fit1);
0368 salpha_an_fit = ppval(equil_fit.salpha_fit.pp_an,rho_fit1);
0369 salpha_bn_fit = ppval(equil_fit.salpha_fit.pp_bn,rho_fit1);
0370 salpha_da0drho_fit = ppval(equil_fit.salpha_fit.pp_da0drho,rho_fit1);
0371 salpha_dandrho_fit = ppval(equil_fit.salpha_fit.pp_dandrho,rho_fit1);
0372 salpha_dbndrho_fit = ppval(equil_fit.salpha_fit.pp_dbndrho,rho_fit1);
0373 salpha_d2a0drho2_fit = ppval(equil_fit.salpha_fit.pp_d2a0drho2,rho_fit1);
0374 salpha_d2andrho2_fit = ppval(equil_fit.salpha_fit.pp_d2andrho2,rho_fit1);
0375 salpha_d2bndrho2_fit = ppval(equil_fit.salpha_fit.pp_d2bndrho2,rho_fit1);
0376
0377 gradrho_a0_fit = ppval(equil_fit.gradrho_fit.pp_a0,rho_fit1);
0378 gradrho_an_fit = ppval(equil_fit.gradrho_fit.pp_an,rho_fit1);
0379 gradrho_bn_fit = ppval(equil_fit.gradrho_fit.pp_bn,rho_fit1);
0380 gradrho_da0drho_fit = ppval(equil_fit.gradrho_fit.pp_da0drho,rho_fit1);
0381 gradrho_dandrho_fit = ppval(equil_fit.gradrho_fit.pp_dandrho,rho_fit1);
0382 gradrho_dbndrho_fit = ppval(equil_fit.gradrho_fit.pp_dbndrho,rho_fit1);
0383 gradrho_d2a0drho2_fit = ppval(equil_fit.gradrho_fit.pp_d2a0drho2,rho_fit1);
0384 gradrho_d2andrho2_fit = ppval(equil_fit.gradrho_fit.pp_d2andrho2,rho_fit1);
0385 gradrho_d2bndrho2_fit = ppval(equil_fit.gradrho_fit.pp_d2bndrho2,rho_fit1);
0386
0387
0388
0389 x_a0_fit1 = ppval_yp(equil_fit.x_fit.pp_a0,rho_fit1);
0390 x_an_fit1 = ppval_yp(equil_fit.x_fit.pp_an,rho_fit1);
0391 x_bn_fit1 = ppval_yp(equil_fit.x_fit.pp_bn,rho_fit1);
0392 x_da0drho_fit1 = ppval_yp(equil_fit.x_fit.pp_da0drho,rho_fit1);
0393 x_dandrho_fit1 = ppval_yp(equil_fit.x_fit.pp_dandrho,rho_fit1);
0394 x_dbndrho_fit1 = ppval_yp(equil_fit.x_fit.pp_dbndrho,rho_fit1);
0395 x_d2a0drho2_fit1 = ppval_yp(equil_fit.x_fit.pp_d2a0drho2,rho_fit1);
0396 x_d2andrho2_fit1 = ppval_yp(equil_fit.x_fit.pp_d2andrho2,rho_fit1);
0397 x_d2bndrho2_fit1 = ppval_yp(equil_fit.x_fit.pp_d2bndrho2,rho_fit1);
0398
0399 y_a0_fit1 = ppval_yp(equil_fit.y_fit.pp_a0,rho_fit1);
0400 y_an_fit1 = ppval_yp(equil_fit.y_fit.pp_an,rho_fit1);
0401 y_bn_fit1 = ppval_yp(equil_fit.y_fit.pp_bn,rho_fit1);
0402 y_da0drho_fit1 = ppval_yp(equil_fit.y_fit.pp_da0drho,rho_fit1);
0403 y_dandrho_fit1 = ppval_yp(equil_fit.y_fit.pp_dandrho,rho_fit1);
0404 y_dbndrho_fit1 = ppval_yp(equil_fit.y_fit.pp_dbndrho,rho_fit1);
0405 y_d2a0drho2_fit1 = ppval_yp(equil_fit.y_fit.pp_d2a0drho2,rho_fit1);
0406 y_d2andrho2_fit1 = ppval_yp(equil_fit.y_fit.pp_d2andrho2,rho_fit1);
0407 y_d2bndrho2_fit1 = ppval_yp(equil_fit.y_fit.pp_d2bndrho2,rho_fit1);
0408
0409 Bx_a0_fit1 = ppval_yp(equil_fit.Bx_fit.pp_a0,rho_fit1);
0410 Bx_an_fit1 = ppval_yp(equil_fit.Bx_fit.pp_an,rho_fit1);
0411 Bx_bn_fit1 = ppval_yp(equil_fit.Bx_fit.pp_bn,rho_fit1);
0412 Bx_da0drho_fit1 = ppval_yp(equil_fit.Bx_fit.pp_da0drho,rho_fit1);
0413 Bx_dandrho_fit1 = ppval_yp(equil_fit.Bx_fit.pp_dandrho,rho_fit1);
0414 Bx_dbndrho_fit1 = ppval_yp(equil_fit.Bx_fit.pp_dbndrho,rho_fit1);
0415 Bx_d2a0drho2_fit1 = ppval_yp(equil_fit.Bx_fit.pp_d2a0drho2,rho_fit1);
0416 Bx_d2andrho2_fit1 = ppval_yp(equil_fit.Bx_fit.pp_d2andrho2,rho_fit1);
0417 Bx_d2bndrho2_fit1 = ppval_yp(equil_fit.Bx_fit.pp_d2bndrho2,rho_fit1);
0418
0419 By_a0_fit1 = ppval_yp(equil_fit.By_fit.pp_a0,rho_fit1);
0420 By_an_fit1 = ppval_yp(equil_fit.By_fit.pp_an,rho_fit1);
0421 By_bn_fit1 = ppval_yp(equil_fit.By_fit.pp_bn,rho_fit1);
0422 By_da0drho_fit1 = ppval_yp(equil_fit.By_fit.pp_da0drho,rho_fit1);
0423 By_dandrho_fit1 = ppval_yp(equil_fit.By_fit.pp_dandrho,rho_fit1);
0424 By_dbndrho_fit1 = ppval_yp(equil_fit.By_fit.pp_dbndrho,rho_fit1);
0425 By_d2a0drho2_fit1 = ppval_yp(equil_fit.By_fit.pp_d2a0drho2,rho_fit1);
0426 By_d2andrho2_fit1 = ppval_yp(equil_fit.By_fit.pp_d2andrho2,rho_fit1);
0427 By_d2bndrho2_fit1 = ppval_yp(equil_fit.By_fit.pp_d2bndrho2,rho_fit1);
0428
0429 Bz_a0_fit1 = ppval_yp(equil_fit.Bz_fit.pp_a0,rho_fit1);
0430 Bz_an_fit1 = ppval_yp(equil_fit.Bz_fit.pp_an,rho_fit1);
0431 Bz_bn_fit1 = ppval_yp(equil_fit.Bz_fit.pp_bn,rho_fit1);
0432 Bz_da0drho_fit1 = ppval_yp(equil_fit.Bz_fit.pp_da0drho,rho_fit1);
0433 Bz_dandrho_fit1 = ppval_yp(equil_fit.Bz_fit.pp_dandrho,rho_fit1);
0434 Bz_dbndrho_fit1 = ppval_yp(equil_fit.Bz_fit.pp_dbndrho,rho_fit1);
0435 Bz_d2a0drho2_fit1 = ppval_yp(equil_fit.Bz_fit.pp_d2a0drho2,rho_fit1);
0436 Bz_d2andrho2_fit1 = ppval_yp(equil_fit.Bz_fit.pp_d2andrho2,rho_fit1);
0437 Bz_d2bndrho2_fit1 = ppval_yp(equil_fit.Bz_fit.pp_d2bndrho2,rho_fit1);
0438
0439 B_a0_fit1 = ppval_yp(equil_fit.B_fit.pp_a0,rho_fit1);
0440 B_an_fit1 = ppval_yp(equil_fit.B_fit.pp_an,rho_fit1);
0441 B_bn_fit1 = ppval_yp(equil_fit.B_fit.pp_bn,rho_fit1);
0442 B_da0drho_fit1 = ppval_yp(equil_fit.B_fit.pp_da0drho,rho_fit1);
0443 B_dandrho_fit1 = ppval_yp(equil_fit.B_fit.pp_dandrho,rho_fit1);
0444 B_dbndrho_fit1 = ppval_yp(equil_fit.B_fit.pp_dbndrho,rho_fit1);
0445 B_d2a0drho2_fit1 = ppval_yp(equil_fit.B_fit.pp_d2a0drho2,rho_fit1);
0446 B_d2andrho2_fit1 = ppval_yp(equil_fit.B_fit.pp_d2andrho2,rho_fit1);
0447 B_d2bndrho2_fit1 = ppval_yp(equil_fit.B_fit.pp_d2bndrho2,rho_fit1);
0448
0449 BP_a0_fit1 = ppval_yp(equil_fit.BP_fit.pp_a0,rho_fit1);
0450 BP_an_fit1 = ppval_yp(equil_fit.BP_fit.pp_an,rho_fit1);
0451 BP_bn_fit1 = ppval_yp(equil_fit.BP_fit.pp_bn,rho_fit1);
0452 BP_da0drho_fit1 = ppval_yp(equil_fit.BP_fit.pp_da0drho,rho_fit1);
0453 BP_dandrho_fit1 = ppval_yp(equil_fit.BP_fit.pp_dandrho,rho_fit1);
0454 BP_dbndrho_fit1 = ppval_yp(equil_fit.BP_fit.pp_dbndrho,rho_fit1);
0455 BP_d2a0drho2_fit1 = ppval_yp(equil_fit.BP_fit.pp_d2a0drho2,rho_fit1);
0456 BP_d2andrho2_fit1 = ppval_yp(equil_fit.BP_fit.pp_d2andrho2,rho_fit1);
0457 BP_d2bndrho2_fit1 = ppval_yp(equil_fit.BP_fit.pp_d2bndrho2,rho_fit1);
0458
0459 r_a0_fit1 = ppval_yp(equil_fit.r_fit.pp_a0,rho_fit1);
0460 r_an_fit1 = ppval_yp(equil_fit.r_fit.pp_an,rho_fit1);
0461 r_bn_fit1 = ppval_yp(equil_fit.r_fit.pp_bn,rho_fit1);
0462 r_da0drho_fit1 = ppval_yp(equil_fit.r_fit.pp_da0drho,rho_fit1);
0463 r_dandrho_fit1 = ppval_yp(equil_fit.r_fit.pp_dandrho,rho_fit1);
0464 r_dbndrho_fit1 = ppval_yp(equil_fit.r_fit.pp_dbndrho,rho_fit1);
0465 r_d2a0drho2_fit1 = ppval_yp(equil_fit.r_fit.pp_d2a0drho2,rho_fit1);
0466 r_d2andrho2_fit1 = ppval_yp(equil_fit.r_fit.pp_d2andrho2,rho_fit1);
0467 r_d2bndrho2_fit1 = ppval_yp(equil_fit.r_fit.pp_d2bndrho2,rho_fit1);
0468
0469 calpha_a0_fit1 = ppval_yp(equil_fit.calpha_fit.pp_a0,rho_fit1);
0470 calpha_an_fit1 = ppval_yp(equil_fit.calpha_fit.pp_an,rho_fit1);
0471 calpha_bn_fit1 = ppval_yp(equil_fit.calpha_fit.pp_bn,rho_fit1);
0472 calpha_da0drho_fit1 = ppval_yp(equil_fit.calpha_fit.pp_da0drho,rho_fit1);
0473 calpha_dandrho_fit1 = ppval_yp(equil_fit.calpha_fit.pp_dandrho,rho_fit1);
0474 calpha_dbndrho_fit1 = ppval_yp(equil_fit.calpha_fit.pp_dbndrho,rho_fit1);
0475 calpha_d2a0drho2_fit1 = ppval_yp(equil_fit.calpha_fit.pp_d2a0drho2,rho_fit1);
0476 calpha_d2andrho2_fit1 = ppval_yp(equil_fit.calpha_fit.pp_d2andrho2,rho_fit1);
0477 calpha_d2bndrho2_fit1 = ppval_yp(equil_fit.calpha_fit.pp_d2bndrho2,rho_fit1);
0478
0479 salpha_a0_fit1 = ppval_yp(equil_fit.salpha_fit.pp_a0,rho_fit1);
0480 salpha_an_fit1 = ppval_yp(equil_fit.salpha_fit.pp_an,rho_fit1);
0481 salpha_bn_fit1 = ppval_yp(equil_fit.salpha_fit.pp_bn,rho_fit1);
0482 salpha_da0drho_fit1 = ppval_yp(equil_fit.salpha_fit.pp_da0drho,rho_fit1);
0483 salpha_dandrho_fit1 = ppval_yp(equil_fit.salpha_fit.pp_dandrho,rho_fit1);
0484 salpha_dbndrho_fit1 = ppval_yp(equil_fit.salpha_fit.pp_dbndrho,rho_fit1);
0485 salpha_d2a0drho2_fit1 = ppval_yp(equil_fit.salpha_fit.pp_d2a0drho2,rho_fit1);
0486 salpha_d2andrho2_fit1 = ppval_yp(equil_fit.salpha_fit.pp_d2andrho2,rho_fit1);
0487 salpha_d2bndrho2_fit1 = ppval_yp(equil_fit.salpha_fit.pp_d2bndrho2,rho_fit1);
0488
0489 gradrho_a0_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_a0,rho_fit1);
0490 gradrho_an_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_an,rho_fit1);
0491 gradrho_bn_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_bn,rho_fit1);
0492 gradrho_da0drho_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_da0drho,rho_fit1);
0493 gradrho_dandrho_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_dandrho,rho_fit1);
0494 gradrho_dbndrho_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_dbndrho,rho_fit1);
0495 gradrho_d2a0drho2_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_d2a0drho2,rho_fit1);
0496 gradrho_d2andrho2_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_d2andrho2,rho_fit1);
0497 gradrho_d2bndrho2_fit1 = ppval_yp(equil_fit.gradrho_fit.pp_d2bndrho2,rho_fit1);
0498
0499
0500
0501 for ii = 1:ntheta_fit,
0502 [x_fit(:,ii),dxdtheta_fit(:,ii),d2xdtheta2_fit(:,ii),dxdrho_fit(:,ii),d2xdthetadrho_fit(:,ii),d2xdrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),x_a0_fit(:),x_an_fit,x_bn_fit,x_da0drho_fit(:),x_dandrho_fit,x_dbndrho_fit,x_d2a0drho2_fit(:),x_d2andrho2_fit,x_d2bndrho2_fit);
0503 [y_fit(:,ii),dydtheta_fit(:,ii),d2ydtheta2_fit(:,ii),dydrho_fit(:,ii),d2ydthetadrho_fit(:,ii),d2ydrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),y_a0_fit(:),y_an_fit,y_bn_fit,y_da0drho_fit(:),y_dandrho_fit,y_dbndrho_fit,y_d2a0drho2_fit(:),y_d2andrho2_fit,y_d2bndrho2_fit);
0504
0505 [r_fit(:,ii),drdtheta_fit(:,ii),d2rdtheta2_fit(:,ii),drdrho_fit(:,ii),d2rdthetadrho_fit(:,ii),d2rdrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),r_a0_fit(:),r_an_fit,r_bn_fit,r_da0drho_fit(:),r_dandrho_fit,r_dbndrho_fit,r_d2a0drho2_fit(:),r_d2andrho2_fit,r_d2bndrho2_fit);
0506
0507 [Bx_fit(:,ii),dBxdtheta_fit(:,ii),d2Bxdtheta2_fit(:,ii),dBxdrho_fit(:,ii),d2Bxdthetadrho_fit(:,ii),d2Bxdrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),Bx_a0_fit(:),Bx_an_fit,Bx_bn_fit,Bx_da0drho_fit(:),Bx_dandrho_fit,Bx_dbndrho_fit,Bx_d2a0drho2_fit(:),Bx_d2andrho2_fit,Bx_d2bndrho2_fit);
0508 [By_fit(:,ii),dBydtheta_fit(:,ii),d2Bydtheta2_fit(:,ii),dBydrho_fit(:,ii),d2Bydthetadrho_fit(:,ii),d2Bydrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),By_a0_fit(:),By_an_fit,By_bn_fit,By_da0drho_fit(:),By_dandrho_fit,By_dbndrho_fit,By_d2a0drho2_fit(:),By_d2andrho2_fit,By_d2bndrho2_fit);
0509 [Bz_fit(:,ii),dBzdtheta_fit(:,ii),d2Bzdtheta2_fit(:,ii),dBzdrho_fit(:,ii),d2Bzdthetadrho_fit(:,ii),d2Bzdrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),Bz_a0_fit(:),Bz_an_fit,Bz_bn_fit,Bz_da0drho_fit(:),Bz_dandrho_fit,Bz_dbndrho_fit,Bz_d2a0drho2_fit(:),Bz_d2andrho2_fit,Bz_d2bndrho2_fit);
0510
0511 [B_fit(:,ii),dBdtheta_fit(:,ii),d2Bdtheta2_fit(:,ii),dBdrho_fit(:,ii),d2Bdthetadrho_fit(:,ii),d2Bdrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),B_a0_fit(:),B_an_fit,B_bn_fit,B_da0drho_fit(:),B_dandrho_fit,B_dbndrho_fit,B_d2a0drho2_fit(:),B_d2andrho2_fit,B_d2bndrho2_fit);
0512 [BP_fit(:,ii),dBPdtheta_fit(:,ii),d2BPdtheta2_fit(:,ii),dBPdrho_fit(:,ii),d2BPdthetadrho_fit(:,ii),d2BPdrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),BP_a0_fit(:),BP_an_fit,BP_bn_fit,BP_da0drho_fit(:),BP_dandrho_fit,BP_dbndrho_fit,BP_d2a0drho2_fit(:),BP_d2andrho2_fit,BP_d2bndrho2_fit);
0513
0514 [calpha_fit(:,ii),dcalphadtheta_fit(:,ii),d2calphadtheta2_fit(:,ii),dcalphadrho_fit(:,ii),d2calphadthetadrho_fit(:,ii),d2calphadrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),calpha_a0_fit(:),calpha_an_fit,calpha_bn_fit,calpha_da0drho_fit(:),calpha_dandrho_fit,calpha_dbndrho_fit,calpha_d2a0drho2_fit(:),calpha_d2andrho2_fit,calpha_d2bndrho2_fit);
0515 [salpha_fit(:,ii),dsalphadtheta_fit(:,ii),d2salphadtheta2_fit(:,ii),dsalphadrho_fit(:,ii),d2salphadthetadrho_fit(:,ii),d2salphadrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),salpha_a0_fit(:),salpha_an_fit,salpha_bn_fit,salpha_da0drho_fit(:),salpha_dandrho_fit,salpha_dbndrho_fit,salpha_d2a0drho2_fit(:),salpha_d2andrho2_fit,salpha_d2bndrho2_fit);
0516
0517 [gradrho_fit(:,ii),dgradrhodtheta_fit(:,ii),d2gradrhodtheta2_fit(:,ii),dgradrhodrho_fit(:,ii),d2gradrhodthetadrho_fit(:,ii),d2gradrhodrho2_fit(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),gradrho_a0_fit(:),gradrho_an_fit,gradrho_bn_fit,gradrho_da0drho_fit(:),gradrho_dandrho_fit,gradrho_dbndrho_fit,gradrho_d2a0drho2_fit(:),gradrho_d2andrho2_fit,gradrho_d2bndrho2_fit);
0518
0519 if isinf(Rp),
0520 Upsilon_fit = ones(size(x_fit(:,ii)));
0521 dUpsilondrho_fit = zeros(size(x_fit(:,ii)));
0522 dUpsilondtheta_fit = zeros(size(x_fit(:,ii)));
0523 d2Upsilondtheta2_fit = zeros(size(x_fit(:,ii)));
0524 d2Upsilondthetadrho_fit = zeros(size(x_fit(:,ii)));
0525 d2Upsilondrho2_fit = zeros(size(x_fit(:,ii)));
0526 else
0527 Upsilon_fit = 1 + x_fit(:,ii)/Rp;
0528 dUpsilondrho_fit = dxdrho_fit(:,ii)/Rp;
0529 dUpsilondtheta_fit = dxdtheta_fit(:,ii)/Rp;
0530 d2Upsilondtheta2_fit = d2xdtheta2_fit(:,ii)/Rp;
0531 d2Upsilondthetadrho_fit = d2xdthetadrho_fit(:,ii)/Rp;
0532 d2Upsilondrho2_fit = d2xdrho2_fit(:,ii)/Rp;
0533
0534 end
0535
0536 [x_fit1(:,ii),dxdtheta_fit1(:,ii),d2xdtheta2_fit1(:,ii),dxdrho_fit1(:,ii),d2xdthetadrho_fit1(:,ii),d2xdrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),x_a0_fit1,x_an_fit1,x_bn_fit,x_da0drho_fit1,x_dandrho_fit1,x_dbndrho_fit1,x_d2a0drho2_fit1,x_d2andrho2_fit1,x_d2bndrho2_fit1);
0537 [y_fit1(:,ii),dydtheta_fit1(:,ii),d2ydtheta2_fit1(:,ii),dydrho_fit1(:,ii),d2ydthetadrho_fit1(:,ii),d2ydrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),y_a0_fit1,y_an_fit1,y_bn_fit,y_da0drho_fit1,y_dandrho_fit1,y_dbndrho_fit1,y_d2a0drho2_fit1,y_d2andrho2_fit1,y_d2bndrho2_fit1);
0538
0539 [r_fit1(:,ii),drdtheta_fit1(:,ii),d2rdtheta2_fit1(:,ii),drdrho_fit1(:,ii),d2rdthetadrho_fit1(:,ii),d2rdrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),r_a0_fit1,r_an_fit1,r_bn_fit,r_da0drho_fit1,r_dandrho_fit1,r_dbndrho_fit1,r_d2a0drho2_fit1,r_d2andrho2_fit1,r_d2bndrho2_fit1);
0540
0541 [Bx_fit1(:,ii),dBxdtheta_fit1(:,ii),d2Bxdtheta2_fit1(:,ii),dBxdrho_fit1(:,ii),d2Bxdthetadrho_fit1(:,ii),d2Bxdrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),Bx_a0_fit1,Bx_an_fit1,Bx_bn_fit1,Bx_da0drho_fit1,Bx_dandrho_fit1,Bx_dbndrho_fit1,Bx_d2a0drho2_fit1,Bx_d2andrho2_fit1,Bx_d2bndrho2_fit1);
0542 [By_fit1(:,ii),dBydtheta_fit1(:,ii),d2Bydtheta2_fit1(:,ii),dBydrho_fit1(:,ii),d2Bydthetadrho_fit1(:,ii),d2Bxydrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),By_a0_fit1,By_an_fit1,By_bn_fit1,By_da0drho_fit1,By_dandrho_fit1,By_dbndrho_fit1,By_d2a0drho2_fit1,By_d2andrho2_fit1,By_d2bndrho2_fit1);
0543 [Bz_fit1(:,ii),dBzdtheta_fit1(:,ii),d2Bzdtheta2_fit1(:,ii),dBzdrho_fit1(:,ii),d2Bzdthetadrho_fit1(:,ii),d2Bzdrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),Bz_a0_fit1,Bz_an_fit1,Bz_bn_fit1,Bz_da0drho_fit1,Bz_dandrho_fit1,Bz_dbndrho_fit1,Bz_d2a0drho2_fit1,Bz_d2andrho2_fit1,Bz_d2bndrho2_fit1);
0544
0545 [B_fit1(:,ii),dBdtheta_fit1(:,ii),d2Bdtheta2_fit1(:,ii),dBdrho_fit1(:,ii),d2Bdthetadrho_fit1(:,ii),d2Bdrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),B_a0_fit1,B_an_fit1,B_bn_fit1,B_da0drho_fit1,B_dandrho_fit1,B_dbndrho_fit1,B_d2a0drho2_fit1,B_d2andrho2_fit1,B_d2bndrho2_fit1);
0546 [BP_fit1(:,ii),dBPdtheta_fit1(:,ii),d2BPdtheta2_fit1(:,ii),dBPdrho_fit1(:,ii),d2BPdthetadrho_fit1(:,ii),d2BPdrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),BP_a0_fit1,BP_an_fit1,BP_bn_fit1,BP_da0drho_fit1,BP_dandrho_fit1,BP_dbndrho_fit1,BP_d2a0drho2_fit1,BP_d2andrho2_fit1,BP_d2bndrho2_fit1);
0547
0548 [calpha_fit1(:,ii),dcalphadtheta_fit1(:,ii),d2calphadtheta2_fit1(:,ii),dcalphadrho_fit1(:,ii),d2calphadthetadrho_fit1(:,ii),d2calphadrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),calpha_a0_fit1,calpha_an_fit1,calpha_bn_fit1,calpha_da0drho_fit1,calpha_dandrho_fit1,calpha_dbndrho_fit1,calpha_d2a0drho2_fit1,calpha_d2andrho2_fit1,calpha_d2bndrho2_fit1);
0549 [salpha_fit1(:,ii),dsalphadtheta_fit1(:,ii),d2salphadtheta2_fit1(:,ii),dsalphadrho_fit1(:,ii),d2salphadthetadrho_fit1(:,ii),d2salphadrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),salpha_a0_fit1,salpha_an_fit1,salpha_bn_fit1,salpha_da0drho_fit1,salpha_dandrho_fit1,salpha_dbndrho_fit1,salpha_d2a0drho2_fit1,salpha_d2andrho2_fit1,salpha_d2bndrho2_fit1);
0550
0551 [gradrho_fit1(:,ii),dgradrhodtheta_fit1(:,ii),d2gradrhodtheta2_fit1(:,ii),dgradrhodrho_fit1(:,ii),d2gradrhodthetadrho_fit1(:,ii),d2gradrhodrho2_fit1(:,ii)] = calcval_yp(equil_fit,theta_fit(ii),gradrho_a0_fit1(:),gradrho_an_fit1,gradrho_bn_fit1,gradrho_da0drho_fit1(:),gradrho_dandrho_fit1,gradrho_dbndrho_fit1,gradrho_d2a0drho2_fit1,gradrho_d2andrho2_fit1,gradrho_d2bndrho2_fit1);
0552
0553 if isinf(Rp),
0554 Upsilon_fit1 = ones(size(x_fit1(:,ii)));
0555 dUpsilondrho_fit1 = zeros(size(x_fit1(:,ii)));
0556 dUpsilondtheta_fit1 = zeros(size(x_fit1(:,ii)));
0557 d2Upsilondtheta2_fit1 = zeros(size(x_fit1(:,ii)));
0558 d2Upsilondthetadrho_fit1 = zeros(size(x_fit1(:,ii)));
0559 d2Upsilondrho2_fit1 = zeros(size(x_fit1(:,ii)));
0560 else
0561 Upsilon_fit1 = 1 + x_fit1(:,ii)/Rp;
0562 dUpsilondrho_fit1 = dxdrho_fit1(:,ii)/Rp;
0563 dUpsilondtheta_fit1 = dxdtheta_fit1(:,ii)/Rp;
0564 d2Upsilondtheta2_fit1 = d2xdtheta2_fit1(:,ii)/Rp;
0565 d2Upsilondthetadrho_fit1 = d2xdthetadrho_fit1(:,ii)/Rp;
0566 d2Upsilondrho2_fit1 = d2xdrho2_fit1(:,ii)/Rp;
0567 end
0568
0569 end
0570
0571
0572
0573 scale_factor = 1.3;
0574 figure('Name','Magnetic equilibrium profile parameters'),clf
0575 set(gcf,'units','inches','position',[0.5,1,10*scale_factor,6*scale_factor]);
0576 set(gca,'position',[0,0,1,1]);
0577
0578 subplot('position',[1/12,0.5+1/16,5/24,5/16])
0579 [ax] = graph1D_jd(rho_fit,psin_fit,0,0,'\rho','\psi_n','',NaN,[0,1],[-eps,1],'-','none','b',2);
0580 [ax] = graph1D_jd(rho_fit,psin_fit1,0,0,'\rho','\psi_n','',NaN,[0,1],[-eps,1],'-','none','c',1);
0581 [ax] = graph1D_jd(prho(1:nr:end),psin(1:nr:end),0,0,'\rho','\psi_n','',NaN,[0,1],[-eps,1],'--','non','r',1);
0582 if isfield(equil_fit,'Te_fit'),
0583 subplot('position',[1/3+1/12,0.5+1/16,5/24,5/16])
0584 [ax] = graph1D_jd(rho_fit,Te_fit,0,0,'\psi','T_e (keV)',strrep(equil_in.id,'_','-'),NaN,[0,1],[-eps,max(equil_in.pTe)],'-','none','b',2);
0585 [ax] = graph1D_jd(rho_fit,Te_fit1,0,0,'\psi','T_e (keV)',strrep(equil_in.id,'_','-'),NaN,[0,1],[-eps,max(equil_in.pTe)],'-','none','c',1);
0586 [ax] = graph1D_jd(prho(1:nr:end),pTe(1:nr:end),0,0,'\rho','T_e (keV)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,[0,1],[-eps,max(equil_in.pTe)],'--','non','r',1);
0587 end
0588 if isfield(equil_fit,'ne_fit'),
0589 subplot('position',[2/3+1/12,0.5+1/16,5/24,5/16])
0590 [ax] = graph1D_jd(rho_fit,ne_fit/1e19,0,0,'\rho','n_e (10^{19} m^{-3})','',NaN,[0,1],[-eps,max(equil_in.pne/1e19)],'-','none','b',2);
0591 [ax] = graph1D_jd(rho_fit,ne_fit1/1e19,0,0,'\rho','n_e (10^{19} m^{-3})','',NaN,[0,1],[-eps,max(equil_in.pne/1e19)],'-','none','c',1);
0592 [ax] = graph1D_jd(prho(1:nr:end),pne(1:nr:end)/1e19,0,0,'\rho','n_e (10^{19} m^{-3})','',NaN,[0,1],[-eps,max(equil_in.pne/1e19)],'--','non','r',1);
0593 end
0594 if isfield(equil_fit,'zTi_fit'),
0595 subplot('position',[1/12,1/8,5/24,5/16])
0596 [ax] = graph1D_jd(rho_fit,zTi_fit,0,0,'\rho','T_i (keV)','',NaN,[0,1],[-eps,max(max(equil_in.pzTi))],'-','none','b',2);
0597 [ax] = graph1D_jd(rho_fit,zTi_fit1,0,0,'\rho','T_i (keV)','',NaN,[0,1],[-eps,max(max(equil_in.pzTi))],'-','none','c',1);
0598 [ax] = graph1D_jd(prho(1:nr:end),pzTi(1:nr:end,:),0,0,'\rho','T_i (keV)','',NaN,[0,1],[-eps,max(max(equil_in.pzTi))],'--','non','r',1);
0599 end
0600 if isfield(equil_fit,'zni_fit'),
0601 subplot('position',[1/3+1/12,1/8,5/24,5/16])
0602 [ax] = graph1D_jd(rho_fit,zni_fit/1e19,0,0,'\rho','n_i (10^{19} m^{-3})','',NaN,[0,1],[-eps,max(max(equil_in.pzni/1e19))],'-','none','b',2);
0603 [ax] = graph1D_jd(rho_fit,zni_fit1/1e19,0,0,'\rho','n_i (10^{19} m^{-3})','',NaN,[0,1],[-eps,max(max(equil_in.pzni/1e19))],'-','none','c',1);
0604 [ax] = graph1D_jd(prho(1:nr:end),pzni(1:nr:end,:)/1e19,0,0,'\rho','n_i (10^{19} m^{-3})','',NaN,[0,1],[-eps,max(max(equil_in.pzni/1e19))],'--','non','r',1);
0605 subplot('position',[2/3+1/12,1/8,5/24,5/16])
0606 end
0607
0608 figure('Name','1st order derivatives of the magnetic equilibrium profile parameters'),clf
0609 set(gcf,'units','inches','position',[0.5,1,10*scale_factor,6*scale_factor]);
0610 set(gca,'position',[0,0,1,1]);
0611
0612 subplot('position',[1/12,0.5+1/16,5/24,5/16])
0613 [ax] = graph1D_jd(rho_fit,dpsindrho_fit,0,0,'','','',NaN,[0,1],[-eps,1],'-','none','b',2);
0614 [ax] = graph1D_jd(rho_fit,dpsindrho_fit1,0,0,'','','',NaN,[0,1],[-eps,1],'-','none','c',1);
0615 [ax] = graph1D_jd(prho(1:nr:end),dpsindrho(1:nr:end),0,0,'\rho','d\psi_nd/\rho','',NaN,[0,1],[min(dpsindrho_fit1),max(dpsindrho_fit1)],'--','non','r',1);
0616 if isfield(equil_fit,'Te_fit'),
0617 subplot('position',[1/3+1/12,0.5+1/16,5/24,5/16])
0618 [ax] = graph1D_jd(rho_fit,dTedrho_fit,0,0,'','',strrep(equil_in.id,'_','-'),NaN,NaN,NaN,'-','none','b',2);
0619 [ax] = graph1D_jd(rho_fit,dTedrho_fit1,0,0,'','',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'-','none','c',1);
0620 [ax] = graph1D_jd(prho(1:nr:end),dTedrho(1:nr:end),0,0,'\rho','dT_ed/\rho (keV)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0621 end
0622 if isfield(equil_fit,'ne_fit'),
0623 subplot('position',[2/3+1/12,0.5+1/16,5/24,5/16])
0624 [ax] = graph1D_jd(rho_fit,dnedrho_fit/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0625 [ax] = graph1D_jd(rho_fit,dnedrho_fit1/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0626 [ax] = graph1D_jd(prho(1:nr:end),dnedrho(1:nr:end)/1e19,0,0,'\rho','dn_e/d\rho (10^{19} m^{-3})','',NaN,NaN,NaN,'--','non','r',1);
0627 end
0628 if isfield(equil_fit,'zTi_fit'),
0629 subplot('position',[1/12,1/8,5/24,5/16])
0630 [ax] = graph1D_jd(rho_fit,zdTidrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0631 [ax] = graph1D_jd(rho_fit,zdTidrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0632 [ax] = graph1D_jd(prho(1:nr:end),zdTidrho(1:nr:end,:),0,0,'\rho','dT_i/d\rho (keV)','',NaN,NaN,NaN,'--','non','r',1);
0633 end
0634 if isfield(equil_fit,'zni_fit'),
0635 subplot('position',[1/3+1/12,1/8,5/24,5/16])
0636 [ax] = graph1D_jd(rho_fit,zdnidrho_fit/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0637 [ax] = graph1D_jd(rho_fit,zdnidrho_fit1/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0638 [ax] = graph1D_jd(prho(1:nr:end),zdnidrho(1:nr:end,:)/1e19,0,0,'\rho','dn_i/d\rho (10^{19} m^{-3})','',NaN,NaN,NaN,'--','non','r',1);
0639 subplot('position',[2/3+1/12,1/8,5/24,5/16])
0640 end
0641
0642 figure('Name','2nd order derivatives of the magnetic equilibrium profile parameters'),clf
0643 set(gcf,'units','inches','position',[0.5,1,10*scale_factor,6*scale_factor]);
0644 set(gca,'position',[0,0,1,1]);
0645
0646 subplot('position',[1/12,0.5+1/16,5/24,5/16])
0647 [ax] = graph1D_jd(rho_fit,d2psindrho2_fit,0,0,'','','',NaN,[0,1],[-eps,1],'-','none','b',2);
0648 [ax] = graph1D_jd(rho_fit,d2psindrho2_fit1,0,0,'','','',NaN,[0,1],[-eps,1],'-','none','c',1);
0649 [ax] = graph1D_jd(prho(1:nr:end),d2psindrho2(1:nr:end),0,0,'\rho','d2\psi_nd/\rho2','',NaN,[0,1],[min(d2psindrho2_fit1),max(d2psindrho2_fit1)],'--','non','r',1);
0650 if isfield(equil_fit,'Te_fit'),
0651 subplot('position',[1/3+1/12,0.5+1/16,5/24,5/16])
0652 [ax] = graph1D_jd(rho_fit,d2Tedrho2_fit,0,0,'','',strrep(equil_in.id,'_','-'),NaN,NaN,NaN,'-','none','b',2);
0653 [ax] = graph1D_jd(rho_fit,d2Tedrho2_fit1,0,0,'','',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'-','none','c',1);
0654 [ax] = graph1D_jd(prho(1:nr:end),d2Tedrho2(1:nr:end),0,0,'\rho','d2T_ed/\rho2 (keV)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0655 end
0656 if isfield(equil_fit,'ne_fit'),
0657 subplot('position',[2/3+1/12,0.5+1/16,5/24,5/16])
0658 [ax] = graph1D_jd(rho_fit,d2nedrho2_fit/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0659 [ax] = graph1D_jd(rho_fit,d2nedrho2_fit1/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0660 [ax] = graph1D_jd(prho(1:nr:end),d2nedrho2(1:nr:end)/1e19,0,0,'\rho','d2n_e/d\rho2 (10^{19} m^{-3})','',NaN,NaN,NaN,'--','non','r',1);
0661 end
0662 if isfield(equil_fit,'zTi_fit'),
0663 subplot('position',[1/12,1/8,5/24,5/16])
0664 [ax] = graph1D_jd(rho_fit,zd2Tidrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0665 [ax] = graph1D_jd(rho_fit,zd2Tidrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0666 [ax] = graph1D_jd(prho(1:nr:end),zd2Tidrho2(1:nr:end,:),0,0,'\rho','d2T_i/d\rho2 (keV)','',NaN,NaN,NaN,'--','non','r',1);
0667 end
0668 if isfield(equil_fit,'zni_fit'),
0669 subplot('position',[1/3+1/12,1/8,5/24,5/16])
0670 [ax] = graph1D_jd(rho_fit,zd2nidrho2_fit/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0671 [ax] = graph1D_jd(rho_fit,zd2nidrho2_fit1/1e19,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0672 [ax] = graph1D_jd(prho(1:nr:end),zd2nidrho2(1:nr:end,:)/1e19,0,0,'','d2n_i/d\rho2 (10^{19} m^{-3})','',NaN,NaN,NaN,'--','non','r',1);
0673 subplot('position',[2/3+1/12,1/8,5/24,5/16])
0674 end
0675
0676
0677
0678 figure('Name','x (majord radius) coordinate'),
0679 [ax] = graph1D_jd(theta_fit,x_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0680 [ax] = graph1D_jd(theta_fit,x_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0681 [ax] = graph1D_jd(equil_in.theta(1:2:end),x(1:nr:end,1:2:end),0,0,'\theta (rd)','x (m)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0682
0683 figure('Name','dx/dtheta'),
0684 [ax] = graph1D_jd(theta_fit,dxdtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0685 [ax] = graph1D_jd(theta_fit,dxdtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0686 [ax] = graph1D_jd(equil_in.theta(1:2:end),dxdtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dx/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0687
0688 figure('Name','dx/drho'),
0689 [ax] = graph1D_jd(theta_fit,dxdrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0690 [ax] = graph1D_jd(theta_fit,dxdrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0691 [ax] = graph1D_jd(equil_in.theta(1:2:end),dxdrho(1:nr:end,1:2:end),0,0,'\theta','dx/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0692
0693 figure('Name','d2xdthetadrho'),
0694 [ax] = graph1D_jd(theta_fit,d2xdthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0695 [ax] = graph1D_jd(theta_fit,d2xdthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0696 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2xdthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2xdthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0697
0698 figure('Name','d2x/drho2'),
0699 [ax] = graph1D_jd(theta_fit,d2xdrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0700 [ax] = graph1D_jd(theta_fit,d2xdrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0701 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2xdrho2(1:nr:end,1:2:end),0,0,'\theta','d2x/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0702
0703 figure('Name','y (vertical) coordinate'),
0704 [ax] = graph1D_jd(theta_fit,y_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0705 [ax] = graph1D_jd(theta_fit,y_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0706 [ax] = graph1D_jd(equil_in.theta(1:2:end),y(1:nr:end,1:2:end),0,0,'\theta (rd)','y (m)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0707
0708 figure('Name','dy/dtheta'),
0709 [ax] = graph1D_jd(theta_fit,dydtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0710 [ax] = graph1D_jd(theta_fit,dydtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0711 [ax] = graph1D_jd(equil_in.theta(1:2:end),dydtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dy/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0712
0713 figure('Name','dy/drho'),
0714 [ax] = graph1D_jd(theta_fit,dydrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0715 [ax] = graph1D_jd(theta_fit,dydrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0716 [ax] = graph1D_jd(equil_in.theta(1:2:end),dydrho(1:nr:end,1:2:end),0,0,'\rho','dy/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0717
0718 figure('Name','d2ydthetadrho'),
0719 [ax] = graph1D_jd(theta_fit,d2ydthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0720 [ax] = graph1D_jd(theta_fit,d2ydthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0721 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2ydthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2ydthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0722
0723 figure('Name','d2y/drho2'),
0724 [ax] = graph1D_jd(theta_fit,d2ydrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0725 [ax] = graph1D_jd(theta_fit,d2ydrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0726 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2ydrho2(1:nr:end,1:2:end),0,0,'\theta','d2y/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0727
0728
0729
0730 figure('Name','r position'),
0731 [ax] = graph1D_jd(theta_fit,r_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0732 [ax] = graph1D_jd(theta_fit,r_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0733 [ax] = graph1D_jd(equil_in.theta(1:2:end),r(1:nr:end,1:2:end),0,0,'\theta (rd)','r (m)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0734
0735 figure('Name','dr/dtheta'),
0736 [ax] = graph1D_jd(theta_fit,drdtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0737 [ax] = graph1D_jd(theta_fit,drdtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0738 [ax] = graph1D_jd(equil_in.theta(1:2:end),drdtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dr/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0739
0740 figure('Name','dr/drho'),
0741 [ax] = graph1D_jd(theta_fit,drdrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0742 [ax] = graph1D_jd(theta_fit,drdrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0743 [ax] = graph1D_jd(equil_in.theta(1:2:end),drdrho(1:nr:end,1:2:end),0,0,'\rho','dr/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0744
0745 figure('Name','d2rdthetadrho'),
0746 [ax] = graph1D_jd(theta_fit,d2ydthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0747 [ax] = graph1D_jd(theta_fit,d2ydthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0748 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2ydthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2rdthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0749
0750 figure('Name','d2r/drho2'),
0751 [ax] = graph1D_jd(theta_fit,d2rdrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0752 [ax] = graph1D_jd(theta_fit,d2rdrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0753 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2rdrho2(1:nr:end,1:2:end),0,0,'\theta','d2r/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0754
0755 figure('Name','cos(alpha)'),
0756 [ax] = graph1D_jd(theta_fit,calpha_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0757 [ax] = graph1D_jd(theta_fit,calpha_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0758 [ax] = graph1D_jd(equil_in.theta(1:2:end),calpha(1:nr:end,1:2:end),0,0,'\theta (rd)','cos(\alpha)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0759
0760 figure('Name','dcos(alpha)/dtheta'),
0761 [ax] = graph1D_jd(theta_fit,dcalphadtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0762 [ax] = graph1D_jd(theta_fit,dcalphadtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0763 [ax] = graph1D_jd(equil_in.theta(1:2:end),dcalphadtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dcos(\alpha)/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0764
0765 figure('Name','dcos(alpha)/drho'),
0766 [ax] = graph1D_jd(theta_fit,dcalphadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0767 [ax] = graph1D_jd(theta_fit,dcalphadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0768 [ax] = graph1D_jd(equil_in.theta(1:2:end),dcalphadrho(1:nr:end,1:2:end),0,0,'\rho','dcos(\alpha)/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','none','r',1);
0769
0770 figure('Name','d2cos(alpha)/dtheta/drho'),
0771 [ax] = graph1D_jd(theta_fit,d2calphadthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0772 [ax] = graph1D_jd(theta_fit,d2calphadthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0773 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2calphadthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2cos(alpha)/d\theta/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0774
0775 figure('Name','d2cos(alpha)/drho2'),
0776 [ax] = graph1D_jd(theta_fit,d2calphadrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0777 [ax] = graph1D_jd(theta_fit,d2calphadrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0778 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2calphadrho2(1:nr:end,1:2:end),0,0,'\theta','d2cos(alpha)/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0779
0780 figure('Name','sin(alpha)'),
0781 [ax] = graph1D_jd(theta_fit,salpha_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0782 [ax] = graph1D_jd(theta_fit,salpha_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0783 [ax] = graph1D_jd(equil_in.theta(1:2:end),salpha(1:nr:end,1:2:end),0,0,'\theta (rd)','sin(\alpha)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0784
0785 figure('Name','dsin(alpha)/dtheta'),
0786 [ax] = graph1D_jd(theta_fit,dsalphadtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0787 [ax] = graph1D_jd(theta_fit,dsalphadtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0788 [ax] = graph1D_jd(equil_in.theta(1:2:end),dsalphadtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dsin(\alpha)/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0789
0790 figure('Name','dsin(alpha)/drho'),
0791 [ax] = graph1D_jd(theta_fit,dsalphadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0792 [ax] = graph1D_jd(theta_fit,dsalphadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0793 [ax] = graph1D_jd(equil_in.theta(1:2:end),dsalphadrho(1:nr:end,1:2:end),0,0,'\rho','dsin(\alpha)/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0794
0795 figure('Name','d2sin(alpha)/dtheta/drho'),
0796 [ax] = graph1D_jd(theta_fit,d2salphadthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0797 [ax] = graph1D_jd(theta_fit,d2salphadthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0798 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2salphadthetadrho(1:nr:end,1:2:end),0,0,'\theta','dsin(\alpha)/d\theta/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0799
0800 figure('Name','d2sin(alpha)/drho2'),
0801 [ax] = graph1D_jd(theta_fit,d2salphadrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0802 [ax] = graph1D_jd(theta_fit,d2salphadrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0803 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2salphadrho2(1:nr:end,1:2:end),0,0,'\theta','d2sin(\alpha)/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0804
0805 figure('Name','cos^2(alpha)+sin^2(alpha)'),
0806 [ax] = graph1D_jd(theta_fit,salpha_fit.^2 + calpha_fit.^2,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0807 [ax] = graph1D_jd(equil_in.theta(1:2:end),salpha(1:nr:end,1:2:end).^2 + calpha(1:nr:end,1:2:end).^2,0,0,'\theta (rd)','cos^2(\alpha)+sin^2(\alpha)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0808
0809 figure('Name','\nabla*\rho'),
0810 [ax] = graph1D_jd(theta_fit,gradrho_fit(1:end,:),0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0811 [ax] = graph1D_jd(theta_fit,gradrho_fit1(1:end,:),0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0812 [ax] = graph1D_jd(equil_in.theta(1:2:end),gradrho(1:nr:end,1:2:end),0,0,'\theta (rd)','\nabla*\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0813
0814 figure('Name','d\nabla*\rho/dtheta'),
0815 [ax] = graph1D_jd(theta_fit,dgradrhodtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0816 [ax] = graph1D_jd(theta_fit,dgradrhodtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0817 [ax] = graph1D_jd(equil_in.theta(1:2:end),dgradrhodtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','d\nabla*\rho/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0818
0819 figure('Name','d\nabla*\rho/drho'),
0820 [ax] = graph1D_jd(theta_fit,dgradrhodrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0821 [ax] = graph1D_jd(theta_fit,dgradrhodrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0822 [ax] = graph1D_jd(equil_in.theta(1:2:end),dgradrhodrho(1:nr:end,1:2:end),0,0,'\rho','d\nabla*\rho/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0823
0824 figure('Name','d2\nabla*\rho/dtheta/drho'),
0825 [ax] = graph1D_jd(theta_fit,d2gradrhodthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0826 [ax] = graph1D_jd(theta_fit,d2gradrhodthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0827 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2gradrhodthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2\nabla*\rhodthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0828
0829 figure('Name','d2\nabla*\rho/drho2'),
0830 [ax] = graph1D_jd(theta_fit,d2ydrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0831 [ax] = graph1D_jd(theta_fit,d2ydrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0832 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2ydrho2(1:nr:end,1:2:end),0,0,'\theta','d2\nabla*\rho/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0833
0834
0835
0836 figure('Name','Toroidal (axial) magnetic field Bz'),
0837 [ax] = graph1D_jd(theta_fit,Bz_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0838 [ax] = graph1D_jd(theta_fit,Bz_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0839 [ax] = graph1D_jd(equil_in.theta(1:2:end),Bz(1:nr:end,1:2:end),0,0,'\theta (rd)','B_{\phi} (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0840
0841 figure('Name','dBz/dtheta'),
0842 [ax] = graph1D_jd(theta_fit,dBzdtheta_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0843 [ax] = graph1D_jd(theta_fit,dBzdtheta_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0844 [ax] = graph1D_jd(equil_in.theta(1:2:end),dBzdtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dBz/d\theta',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0845
0846 figure('Name','dBz/drho'),
0847 [ax] = graph1D_jd(theta_fit,dBzdrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0848 [ax] = graph1D_jd(theta_fit,dBzdrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0849 [ax] = graph1D_jd(equil_in.theta(1:2:end),dBzdrho(1:nr:end,1:2:end),0,0,'\psi_{n}','dBz/d\rho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0850
0851 figure('Name','d2Bz/dtheta/drho'),
0852 [ax] = graph1D_jd(theta_fit,d2Bzdthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0853 [ax] = graph1D_jd(theta_fit,d2Bzdthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0854 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2Bzdthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2Bzdthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0855
0856 figure('Name','d2Bz/drho2'),
0857 [ax] = graph1D_jd(theta_fit,d2Bzdrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0858 [ax] = graph1D_jd(theta_fit,d2Bzdrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0859 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2Bzdrho2(1:nr:end,1:2:end),0,0,'\theta','d2Bz/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0860
0861 figure('Name','Poloidal magnetic field BP'),
0862 [ax] = graph1D_jd(theta_fit,BP_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0863 [ax] = graph1D_jd(theta_fit,BP_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0864 [ax] = graph1D_jd(equil_in.theta(1:2:end),BP(1:nr:end,1:2:end),0,0,'\theta (rd)','B_P (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0865
0866 figure('Name','dBP/dtheta'),
0867 [ax] = graph1D_jd(theta_fit,dBPdtheta_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0868 [ax] = graph1D_jd(theta_fit,dBPdtheta_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0869 [ax] = graph1D_jd(equil_in.theta(1:2:end),dBPdtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dB_P/d\theta (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0870
0871 figure('Name','dBP/drho'),
0872 [ax] = graph1D_jd(theta_fit,dBPdrho_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0873 [ax] = graph1D_jd(theta_fit,dBPdrho_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0874 [ax] = graph1D_jd(equil_in.theta(1:2:end),dBPdrho(1:nr:end,1:2:end),0,0,'\theta (rd)','dB_P/d\rho (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0875
0876 figure('Name','d2BP/dtheta/drho'),
0877 [ax] = graph1D_jd(theta_fit,d2BPdthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0878 [ax] = graph1D_jd(theta_fit,d2BPdthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0879 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2BPdthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2BPdthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0880
0881 figure('Name','d2BP/drho2'),
0882 [ax] = graph1D_jd(theta_fit,d2BPdrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0883 [ax] = graph1D_jd(theta_fit,d2BPdrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0884 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2BPdrho2(1:nr:end,1:2:end),0,0,'\theta','d2BP/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0885
0886 figure('Name','Total magnetic field'),
0887 [ax] = graph1D_jd(theta_fit,B_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0888 [ax] = graph1D_jd(theta_fit,B_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0889 [ax] = graph1D_jd(equil_in.theta(1:2:end),B(1:nr:end,1:2:end),0,0,'\theta (rd)','B (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0890
0891 figure('Name','dB/dtheta'),
0892 [ax] = graph1D_jd(theta_fit,dBdtheta_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0893 [ax] = graph1D_jd(theta_fit,dBdtheta_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0894 [ax] = graph1D_jd(equil_in.theta(1:2:end),dBdtheta(1:nr:end,1:2:end),0,0,'\theta (rd)','dB/d\theta (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0895
0896 figure('Name','dB/drho'),
0897 [ax] = graph1D_jd(theta_fit,dBdrho_fit,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','b',2);
0898 [ax] = graph1D_jd(theta_fit,dBdrho_fit1,0,0,'\rho','\rho','',NaN,NaN,NaN,'-','none','c',1);
0899 [ax] = graph1D_jd(equil_in.theta(1:2:end),dBdrho(1:nr:end,1:2:end),0,0,'\theta (rd)','dB/d\rho (T)',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0900
0901 figure('Name','d2B/dtheta/drho'),
0902 [ax] = graph1D_jd(theta_fit,d2Bdthetadrho_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0903 [ax] = graph1D_jd(theta_fit,d2Bdthetadrho_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0904 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2Bdthetadrho(1:nr:end,1:2:end),0,0,'\theta','d2Bdthetadrho',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0905
0906 figure('Name','d2B/drho2'),
0907 [ax] = graph1D_jd(theta_fit,d2Bdrho2_fit,0,0,'','','',NaN,NaN,NaN,'-','none','b',2);
0908 [ax] = graph1D_jd(theta_fit,d2Bdrho2_fit1,0,0,'','','',NaN,NaN,NaN,'-','none','c',1);
0909 [ax] = graph1D_jd(equil_in.theta(1:2:end),d2Bdrho2(1:nr:end,1:2:end),0,0,'\theta','d2B/d\rho2',[strrep(equil_in.id,'_','-'),', blue: ppval, cyan: ppval-yp, red: numerical'],NaN,NaN,NaN,'--','non','r',1);
0910
0911 xmin = min(min(x));
0912 xmax = max(max(x));
0913 ymin = min(min(y));
0914 ymax = max(max(y));
0915
0916 figure('Name','Magnetic equilibrium flux surface contour')
0917
0918 [ax] = graph1D_jd(x(1:nr:end,1:2:end),y(1:nr:end,1:2:end),0,0,'','','',NaN,[xmin,xmax],[ymin,ymax],'-','none','r',2);drawnow
0919 [ax] = graph1D_jd(x(1:nr:end,:)',y(1:nr:end,:)',0,0,'x(m)','y(m)','Flux-surfaces labeled by \rho=0,0.1,0.2...1',NaN,[xmin,xmax],[ymin,ymax],'-','none','r',2);
0920
0921 [ax] = graph1D_jd(x_fit(1:nr:end,1:2:end),y_fit(1:nr:end,1:2:end),0,0,'','','',NaN,[xmin,xmax],[ymin,ymax],'-','none','b',1);drawnow
0922 [ax] = graph1D_jd(x_fit(:,:)',y_fit(:,:)',0,0,'x(m)','y(m)','Flux-surfaces labeled by \rho=0,0.1,0.2...1',NaN,[xmin,xmax],[ymin,ymax],'-','none','b',1);
0923
0924 [ax] = graph1D_jd(x_fit1(1:nr:end,1:2:end),y_fit1(1:nr:end,1:2:end),0,0,'','','',NaN,[xmin,xmax],[ymin,ymax],'--','none','c',1);drawnow
0925 [ax] = graph1D_jd(x_fit1(:,:)',y_fit1(:,:)',0,0,'x(m)','y(m)','Flux-surfaces labeled by \rho=0,0.1,0.2...1',NaN,[xmin,xmax],[ymin,ymax],'--','none','c',1);
0926 axis('equal');drawnow
0927
0928 else
0929 equilval = equilval_yp(equil_fit,rho,theta);
0930
0931 Te = equilval.Te;
0932 dTedrho = equilval.dTedrho;
0933 d2Tedrho2 = equilval.d2Tedrho2;
0934
0935 ne = equilval.ne;
0936 dnedrho = equilval.dnedrho;
0937 d2nedrho2 = equilval.d2nedrho2;
0938
0939 zTi = equilval.zTi;
0940 dzTidrho = equilval.dzTidrho;
0941 d2zTidrho2 = equilval.d2zTidrho2;
0942
0943 zni = equilval.zni;
0944 dznidrho = equilval.dznidrho;
0945 d2znidrho2 = equilval.d2znidrho2;
0946
0947 x = equilval.x;
0948 dxdtheta = equilval.dxdtheta;
0949 d2xdtheta2 = equilval.d2xdtheta2;
0950 dxdrho = equilval.dxdrho;
0951 d2xdthetadrho = equilval.d2xdthetadrho;
0952 d2xdrho2 = equilval.d2xdrho2;
0953
0954 y = equilval.y;
0955 dydtheta = equilval.dydtheta;
0956 d2ydtheta2 = equilval.d2ydtheta2;
0957 dydrho = equilval.dydrho;
0958 d2ydthetadrho = equilval.d2ydthetadrho;
0959 d2ydrho2 = equilval.d2ydrho2;
0960
0961 r = equilval.r;
0962 drdtheta = equilval.drdtheta;
0963 d2rdtheta2 = equilval.d2rdtheta2;
0964 drdrho = equilval.drdrho;
0965 d2rdthetadrho = equilval.d2rdthetadrho;
0966 d2rdrho2 = equilval.d2rdrho2;
0967
0968 salpha = equilval.salpha;
0969 dsalphadtheta = equilval.dsalphadtheta;
0970 d2salphadtheta2 = equilval.d2salphadtheta2;
0971 dsalphadrho = equilval.dsalphadrho;
0972 d2salphadthetadrho = equilval.d2salphadthetadrho;
0973 d2salphadrho2 = equilval.d2salphadrho2;
0974
0975 calpha = equilval.calpha;
0976 dcalphadtheta = equilval.dcalphadtheta;
0977 d2calphadtheta2 = equilval.d2calphadtheta2;
0978 dcalphadrho = equilval.dcalphadrho;
0979 d2calphadthetadrho = equilval.d2calphadthetadrho;
0980 d2calphadrho2 = equilval.d2calphadrho2;
0981
0982 Bx = equilval.Bx;
0983 dBxdtheta = equilval.dBxdtheta;
0984 d2Bxdtheta2 = equilval.d2Bxdtheta2;
0985 dBxdrho = equilval.dBxdrho;
0986 d2Bxdthetadrho = equilval.d2Bxdthetadrho;
0987 d2Bxdrho2 = equilval.d2Bxdrho2;
0988
0989 By = equilval.By;
0990 dBydtheta = equilval.dBydtheta;
0991 d2Bydtheta2 = equilval.d2Bydtheta2;
0992 dBydrho = equilval.dBydrho;
0993 d2Bydthetadrho = equilval.d2Bydthetadrho;
0994 d2Bydrho2 = equilval.d2Bydrho2;
0995
0996 Bz = equilval.Bz;
0997 dBzdtheta = equilval.dBzdtheta;
0998 d2Bzdtheta2 = equilval.d2Bzdtheta2;
0999 dBzdrho = equilval.dBzdrho;
1000 d2Bzdthetadrho = equilval.d2Bzdthetadrho;
1001 d2Bzdrho2 = equilval.d2Bzdrho2;
1002
1003 BP = equilval.BP;
1004 dBPdtheta = equilval.dBPdtheta;
1005 d2BPdtheta2 = equilval.d2BPdtheta2;
1006 dBPdrho = equilval.dBPdrho;
1007 d2BPdthetadrho = equilval.d2BPdthetadrho;
1008 d2BPdrho2 = equilval.d2BPdrho2;
1009
1010 B = equilval.B;
1011 dBdtheta = equilval.dBdtheta;
1012 d2Bdtheta2 = equilval.d2Bdtheta2;
1013 dBdrho = equilval.dBdrho;
1014 d2Bdthetadrho = equilval.d2Bdthetadrho;
1015 d2Bdrho2 = equilval.d2Bdrho2;
1016
1017 gradrho = equilval.gradrho;
1018 dgradrhodtheta = equilval.dgradrhodtheta;
1019 d2gradrhodtheta2 = equilval.d2gradrhodtheta2;
1020 dgradrhodrho = equilval.dgradrhodrho;
1021 d2gradrhodthetadrho = equilval.d2gradrhodthetadrho;
1022 d2gradrhodrho2 = equilval.d2gradrhodrho2;
1023
1024 Upsilon = equilval.Upsilon;
1025 dUpsilondtheta = equilval.dUpsilondtheta;
1026 d2Upsilondtheta2 = equilval.d2Upsilondtheta2;
1027 dUpsilondrho = equilval.dUpsilondrho;
1028 d2Upsilondthetadrho = equilval.d2Upsilondthetadrho;
1029 d2Upsilondrho2 = equilval.d2Upsilondrho2;
1030
1031
1032
1033
1034
1035
1036 if nargout ~= 2,
1037 disp('----------------------------');
1038 if isfield(equil_fit,'Te_fit'),
1039 disp(['equil_fit.Te_fit.pp_f.coefs(1) = ',num2str(equil_fit.Te_fit.pp_f.coefs(1))]);
1040 disp(['equil_fit.Te_fit.pp_dfdrho.coefs(1) = ',num2str(equil_fit.Te_fit.pp_dfdrho.coefs(1))]);
1041 disp(['equil_fit.Te_fit.pp_d2fdrho2.coefs(1) = ',num2str(equil_fit.Te_fit.pp_d2fdrho2.coefs(1))]);
1042 end
1043 disp(['equil_fit.Bz_fit.n = ',num2str(equil_fit.Bz_fit.n(end))]);
1044 disp(['equil_fit.Bz_fit.bn.coefs(1) = ',num2str(equil_fit.Bz_fit.pp_bn.coefs(1))]);
1045 disp(['equil_fit.Bz_fit.dbndrho.coefs(1) = ',num2str(equil_fit.Bz_fit.pp_dbndrho.coefs(1))]);
1046 disp(['equil_fit.Bz_fit.d2bndrho2.coefs(1) = ',num2str(equil_fit.Bz_fit.pp_d2bndrho2.coefs(1))]);
1047 disp('----------------------------');
1048 if isfield(equil_fit,'Te_fit'),
1049 disp(['Te(',num2str(rho),'),dTedrho(',num2str(rho),'),d2Tedrho2(',num2str(rho),') (keV) = ',num2str(Te),',',num2str(dTedrho),',',num2str(d2Tedrho2)]);
1050 end
1051 if isfield(equil_fit,'ne_fit'),
1052 disp(['ne(',num2str(rho),'),dnedrho(',num2str(rho),'),d2nedrho2(',num2str(rho),') (10+19 m-3) = ',num2str(ne/1e19),',',num2str(dnedrho/1e19),',',num2str(d2nedrho2/1e19)]);
1053 end
1054 if isfield(equil_fit,'zTi_fit'),
1055 for is = 1:ns,
1056 disp(['zTi(',int2str(is),',',num2str(rho),'),dzTidrho(',int2str(is),',',num2str(rho),'),d2zTidrho2(',int2str(is),' ,',num2str(rho),') (keV) = ',num2str(zTi(is)),',',num2str(dzTidrho(is)),',',num2str(d2zTidrho2(is))]);
1057 end
1058 end
1059 if isfield(equil_fit,'zni_fit'),
1060 for is = 1:ns,
1061 disp(['zni(',int2str(is),',',num2str(rho),'),dznidrho(',int2str(is),',',num2str(rho),'),d2znidrho2(',int2str(is),' ,',num2str(rho),') (10+19 m-3) = ',num2str(zni(is)/1e19),',',num2str(dznidrho(is)/1e19),',',num2str(d2znidrho2(is)/1e19)]);
1062 end
1063 end
1064
1065 disp('----------------------------');
1066 disp(['x(',num2str(rho),',',num2str(theta),'),dxdrho(',num2str(rho),',',num2str(theta),'),dxdtheta(',num2str(rho),',',num2str(theta),') (m) = ',num2str(x),',',num2str(dxdrho),',',num2str(dxdtheta)]);
1067 disp(['d2xdtheta2(',num2str(rho),',',num2str(theta),'),d2xdthetadrho(',num2str(rho),',',num2str(theta),'),d2xdrho2(',num2str(rho),',',num2str(theta),') (m) = ',num2str(d2xdtheta2),',',num2str(d2xdthetadrho),',',num2str(d2xdrho2)]);
1068 disp('----------------------------');
1069 disp(['y(',num2str(rho),',',num2str(theta),'),dydrho(',num2str(rho),',',num2str(theta),'),dydtheta(',num2str(rho),',',num2str(theta),') (m) = ',num2str(y),',',num2str(dydrho),',',num2str(dydtheta)]);
1070 disp(['d2ydtheta2(',num2str(rho),',',num2str(theta),'),d2ydthetadrho(',num2str(rho),',',num2str(theta),'),d2ydrho2(',num2str(rho),',',num2str(theta),') (m) = ',num2str(d2ydtheta2),',',num2str(d2ydthetadrho),',',num2str(d2ydrho2)]);
1071 disp('----------------------------');
1072 disp(['r(',num2str(rho),',',num2str(theta),'),drdrho(',num2str(rho),',',num2str(theta),'),drdtheta(',num2str(rho),',',num2str(theta),') (m) = ',num2str(r),',',num2str(drdrho),',',num2str(drdtheta)]);
1073 disp(['d2rdtheta2(',num2str(rho),',',num2str(theta),'),d2rdthetadrho(',num2str(rho),',',num2str(theta),'),d2rdrho2(',num2str(rho),',',num2str(theta),') (m) = ',num2str(d2rdtheta2),',',num2str(d2rdthetadrho),',',num2str(d2rdrho2)]);
1074 disp('----------------------------');
1075 disp(['Bx(',num2str(rho),',',num2str(theta),'),dBxdrho(',num2str(rho),',',num2str(theta),'),dBxdtheta(',num2str(rho),',',num2str(theta),') (T) = ',num2str(Bx),',',num2str(dBxdrho),',',num2str(dBxdtheta)]);
1076 disp(['d2Bxdtheta2(',num2str(rho),',',num2str(theta),'),d2Bxdthetadrho(',num2str(rho),',',num2str(theta),'),d2Bxdrho2(',num2str(rho),',',num2str(theta),') (T) = ',num2str(d2Bxdtheta2),',',num2str(d2Bxdthetadrho),',',num2str(d2Bxdrho2)]);
1077 disp('----------------------------');
1078 disp(['By(',num2str(rho),',',num2str(theta),'),dBydrho(',num2str(rho),',',num2str(theta),'),dBydtheta(',num2str(rho),',',num2str(theta),') (T) = ',num2str(By),',',num2str(dBydrho),',',num2str(dBydtheta)]);
1079 disp(['d2Bydtheta2(',num2str(rho),',',num2str(theta),'),d2Bydthetadrho(',num2str(rho),',',num2str(theta),'),d2Bydrho2(',num2str(rho),',',num2str(theta),') (T) = ',num2str(d2Bydtheta2),',',num2str(d2Bydthetadrho),',',num2str(d2Bydrho2)]);
1080 disp('----------------------------');
1081 disp(['Bz(',num2str(rho),',',num2str(theta),'),dBzdrho(',num2str(rho),',',num2str(theta),'),dBzdtheta(',num2str(rho),',',num2str(theta),') (T) = ',num2str(Bz),',',num2str(dBzdrho),',',num2str(dBzdtheta)]);
1082 disp(['d2Bzdtheta2(',num2str(rho),',',num2str(theta),'),d2Bzdthetadrho(',num2str(rho),',',num2str(theta),'),d2Bzdrho2(',num2str(rho),',',num2str(theta),') (T) = ',num2str(d2Bzdtheta2),',',num2str(d2Bzdthetadrho),',',num2str(d2Bzdrho2)]);
1083 disp('----------------------------');
1084 disp(['BP(',num2str(rho),',',num2str(theta),'),dBPdrho(',num2str(rho),',',num2str(theta),'),dBPdtheta(',num2str(rho),',',num2str(theta),') (T) = ',num2str(BP),',',num2str(dBPdrho),',',num2str(dBPdtheta)]);
1085 disp(['d2BPdtheta2(',num2str(rho),',',num2str(theta),'),d2BPdthetadrho(',num2str(rho),',',num2str(theta),'),d2BPdrho2(',num2str(rho),',',num2str(theta),') (T) = ',num2str(d2BPdtheta2),',',num2str(d2BPdthetadrho),',',num2str(d2BPdrho2)]);
1086 disp('----------------------------');
1087 disp(['B(',num2str(rho),',',num2str(theta),'),dBdrho(',num2str(rho),',',num2str(theta),'),dBdtheta(',num2str(rho),',',num2str(theta),') (T) = ',num2str(B),',',num2str(dBdrho),',',num2str(dBdtheta)]);
1088 disp(['d2Bdtheta2(',num2str(rho),',',num2str(theta),'),d2Bdthetadrho(',num2str(rho),',',num2str(theta),'),d2Bdrho2(',num2str(rho),',',num2str(theta),') (T) = ',num2str(d2Bdtheta2),',',num2str(d2Bdthetadrho),',',num2str(d2Bdrho2)]);
1089 disp('----------------------------');
1090 disp(['calpha(',num2str(rho),',',num2str(theta),'),dcalphadrho(',num2str(rho),',',num2str(theta),'),dcalphadtheta(',num2str(rho),',',num2str(theta),') = ',num2str(calpha),',',num2str(dcalphadrho),',',num2str(dcalphadtheta)]);
1091 disp(['d2calphadtheta2(',num2str(rho),',',num2str(theta),'),d2calphadthetadrho(',num2str(rho),',',num2str(theta),'),d2calphadrho2(',num2str(rho),',',num2str(theta),') = ',num2str(d2calphadtheta2),',',num2str(d2calphadthetadrho),',',num2str(d2calphadrho2)]);
1092 disp(['salpha(',num2str(rho),',',num2str(theta),'),dsalphadrho(',num2str(rho),',',num2str(theta),'),dsalphadtheta(',num2str(rho),',',num2str(theta),') = ',num2str(salpha),',',num2str(dsalphadrho),',',num2str(dsalphadtheta)]);
1093 disp(['d2salphadtheta2(',num2str(rho),',',num2str(theta),'),d2salphadthetadrho(',num2str(rho),',',num2str(theta),'),d2salphadrho2(',num2str(rho),',',num2str(theta),') = ',num2str(d2salphadtheta2),',',num2str(d2salphadthetadrho),',',num2str(d2salphadrho2)]);
1094 disp('----------------------------');
1095 disp(['gradrho(',num2str(rho),',',num2str(theta),'),dgradrhodrho(',num2str(rho),',',num2str(theta),'),dgradrhodtheta(',num2str(rho),',',num2str(theta),') = ',num2str(gradrho),',',num2str(dgradrhodrho),',',num2str(dgradrhodtheta)]);
1096 disp(['d2gradrhodtheta2(',num2str(rho),',',num2str(theta),'),d2gradrhodthetadrho(',num2str(rho),',',num2str(theta),'),d2gradrhodrho2(',num2str(rho),',',num2str(theta),') = ',num2str(d2gradrhodtheta2),',',num2str(d2gradrhodthetadrho),',',num2str(d2gradrhodrho2)]);
1097 disp('----------------------------');
1098 disp(['Upsilon(',num2str(rho),',',num2str(theta),'),dUpsilondrho(',num2str(rho),',',num2str(theta),'),dUpsilondtheta(',num2str(rho),',',num2str(theta),') = ',num2str(Upsilon),',',num2str(dUpsilondrho),',',num2str(dUpsilondtheta)]);
1099 disp(['d2Upsilondtheta2(',num2str(rho),',',num2str(theta),'),d2Upsilondthetadrho(',num2str(rho),',',num2str(theta),'),d2Upsilondrho2(',num2str(rho),',',num2str(theta),') = ',num2str(d2Upsilondtheta2),',',num2str(d2Upsilondthetadrho),',',num2str(d2Upsilondrho2)]);
1100 end
1101 end
1102